Prerana Shrestha, Ph.D.
Life Sciences Building
Department of Neurobiology & Behavior
Renaissance School of Medicine
Stony Brook University
Stony Brook, NY 11794
Assistant Professor
Research Experience
2021-present
Assistant Professor – Stony Brook University, Stony Brook, NY
Department of Neurobiology & Behavior
2014-2020
Postdoctoral Associate - NYU Center for Neural Science, New York, NY
Laboratory of Dr. Eric Klann
2011-2013
Postdoctoral Associate - The Rockefeller University, New York, NY
Laboratory of Dr. Nathaniel Heintz
2004-2011
Graduate Research Fellow - The Rockefeller University, New York, NY
Laboratory of Dr. Nathaniel Heintz
2002-2003
Undergraduate Research Fellow – Harvard Medical School, Boston, MA
Laboratory of Dr. John Blenis
Education
2003-2011
The Rockefeller University
New York, NY
Ph.D. in Life Sciences
1999-2003
Bates College
Lewiston, ME
B.S. in Biological Chemistry
Magna cum Laude
Honors & Awards
2022
Sloan Research Fellow, Alfred P. Sloan Foundation
2019
Anuradha Rao Memorial Award, Cell Press & Rao family
2018
Tianqiao & Chrissy Chen Travel Fellow, CSHL & Chen Institute
2017-2020
NARSAD Young Investigator, Brain & Behavior Research Foundation (BBRF)
2017
Molecular & Cellular Cognition Society (MCCS) Scholar
2001-2003
Charles A. Dana Scholar, Bates College
2003
College Key of Bates College
1996
Ratna Education Medal, School Leaving Certificate (SLC), Nepal Government
Sloan Research Fellowship, Alfred P Sloan Foundation (2022 - 2023)
Startup Funds from Stony Brook Foundation, Stony Brook University (2021 - current)
Travel award for EMBO Workshop on Molecular Neuroscience, NCBI, Bangalore (February 2019)
NARSAD Young Investigator Grant, Brain & Behavior Research Foundation (2017 - 2020)
Travel Award for Junior Scientist Workshop in Neuronal Cell Biology, Janelia Farm, VA (May 2017)
Full Undergraduate Scholarship, Bates College (1999 - 2003)
HHMI Independent Research Grant, Bates College (Summer 2002)
Sigma Xi Grant-in-aid-of-Research, Sigma Xi Scientific Research Society (Summer 2002)
Hoffman Mellon Research Support Grant, Bates College (Summer 2000, 2001)
Research Funding
Invited Talks
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Shrestha, P. Neuronal protein synthesis during consolidation of long-term emotional memories. Horizons in Molecular Biology. Max Planck Institute for Molecular Biology. September, 2022
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Shrestha, P. Spatiotemporally resolved protein synthesis as a molecular framework for memory consolidation. Nepali Academics in America (NACA). April 2022
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Shrestha, P. Translation modulatory pathways in learned emotional behaviors. IBRO-APRC School on Understanding Neuroscience & the Spectrum of Neurogenetic Disorders. IBRO – August, 2021
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Shrestha, P. Protein synthesis regulation during consolidation of long-term emotional memories. Kavli Neural Systems mini-symposium: RNA regulation & brain function. The Rockefeller University – October, 2020
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Shrestha, P. Using chemogenetic strategies to understand amygdalar protein synthesis regulation during long term memory consolidation. University of California at Berkeley – February, 2020
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Shrestha, P. Investigating long-term emotional memories with chemogenetic protein synthesis inhibition in the amygdala. Icahn School of Medicine at Mount Sinai, New York, NY - January 2020
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Shrestha, P. Investigating long-term emotional memories with chemogenetic protein synthesis inhibition in the amygdala. NYU Center for Neural Science Retreat, Skytop Lodge, PA – November, 2019
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Shrestha, P. A protein synthesis code for differential threat memory trace in central amygdala neurons. SfN Nanosymposium: Molecular mechanisms of memory formation & reconsolidation. Chicago – October, 2019
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Shrestha, P. Disrupting memory consolidation by blocking protein synthesis with a chemogenetic strategy. Junior Scientist Workshop in Neuronal Cell Biology, Janelia Farm – May, 2017
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Shrestha, P. Disrupting memory consolidation by blocking protein synthesis with a chemogenetic strategy. Annual Neuroscience Retreat, NYU Neuroscience Institute, Mohonk Mountain, NY – April, 2017
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Shrestha, P. mTORC1 in the central Oxytocin system & social behavior. NYU Langone Medical Center – January, 2017
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Shrestha, P. Disrupting memory consolidation by blocking protein synthesis with a chemogenetic strategy. Molecular & Cellular Cognition Society Annual Meeting – November, 2016
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Shrestha, P. Role of a novel cell type in mouse neocortex in stress-induced depression. Central Department of Biotechnology, Tribhuvan University, Kathmandu, Nepal – December, 2014
Manuscripts in Preparation
Shrestha, P*., Juan, C-Y., Oliviera, M.M., Ruiz, K.S.A., Marmacz, M., Triano-Del Rio, R., Hou, M., Singh, M., Chime, A., Fraser, A., Farb, C., Pena, N., Ledoux, J. & Klann E*. Sex-specific susceptibility to social isolation stress in a mouse model of Tuberous Sclerosis Complex. *Corresponding authors
Shrestha, P.*, Triana-Del Rio R*, Cain, C., Oliviera, M.M., Hou, M., Ferber, C., Grinevich, V., Froemke, R., Young, L., Ledoux, J., Stoop, R., & Klann, E. Oxytocin enables the learning of threat discrimination & defensive responses through a specific cellular pathway in the central amygdala. *Equal contribution
Triano-Del Rio, R., Guardado, J., Ranade, S., Ledoux, J., Klann, E. & Shrestha, P. Oxytocin signaling in emotional & social networks regulates the acquisition of threat/stress response choice. Frontiers in Molecular Neuroscience.
Ruiz, KS-A., Fraser, A., Chu, S., Ranade, S., Zerihoun, A.T., Oliviera, M.M., Klann, E., & Shrestha, P. Temporal evolution of prefrontal protein synthesis during remote memory consolidation.
Publications
Shrestha, P. & Klann, E. Spatiotemporally-resolved protein synthesis as molecular framework for memory consolidation. Trends in Neurosciences 2022. 45(4): 297-311. doi: 10/1016/j.tins.2022.01.004
Shrestha, P*., Shan, Z., Marmacz, M., Zerihoun, A.T., Juan, C-Y., San Agustin Ruiz, K., Pelletier, J., Heintz, N. & Klann, E*. Amygdala inhibitory neurons as loci for translational control of emotional memories. Nature 2020. 586(7829):407-411. doi: 10.1038/s41586-020-2793-8
Shrestha, P.*, Ayata, P.*, Vidal, P.H., Gastone, A., Heintz, N. & Klann, E. Cell-type-specific drug-inducible protein synthesis inhibition demonstrates that memory consolidation requires rapid neuronal translation. Nature Neuroscience 2020. 23(2):281-292. doi: 10.1038/s41593-019-0568-z *Equal contribution
Shrestha, P. & Klann, E. Alzheimer’s disease: Lost memories found. Nature 2016. Mar 24; 531(7595):450-1
Doyle, J.P., Dougherty, J.D., Heiman, M., Schmidt, E.F., Stevens, T.R., Ma, G., Bupp, S., Shrestha, P., Shah, R.D., Doughty, M.L., Gong, S., Greengard, P.& Heintz, N. Application of a translational profiling approach for the comparative analysis of CNS cell types. Cell. 2008 Nov 14: 135 (4): 749-62.
Selected Conference Abstracts
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Shrestha, P., Juan C-Y., Oliviera, M.M., Ruiz, K.S.A., Singh, M., Triano-Del Rio, R., Hou, M., Farb, C., Boender, A., Marmacz, M., Chime, A., Pena, N., Chong, A., Fraser, A., Young, L., Ledoux, J. & Klann E. Stress induced emotional dysregulation in a mouse model of Tuberous Sclerosis complex. Society for Neuroscience virtual meeting - 2021
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Triana-Del Rio R, Andrade E, Yaragudri V, Branigan L, Farb C, da Cruz J, Hou M, Piper W, Oyarzun JP, Cunha C, Li Y, Shrestha, P., Alberini C, Constantinople C, Klann E, Sears R, Cain C, & Ledoux J. Cannabinoid signals modulate the amygdalostriatal circuit for learning proactive threat-coping. Society for Neuroscience Global Connectome Meeting (virtual) - 2021
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Shrestha, P., Shan Z, Marmarcz M, Zerihoun AT, Juan CJ, San Agustin Ruiz K, Herrero-Vidal PM, Pelletier J, Heintz N, & Klann E. De novo translation in distinct centrolateral amygdala interneurons is required for long-term emotional memories. Pavlovian Society Annual Meeting, Vancouver, Canada - 2019
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Shrestha, P., Ayata P, Gastone A, Herrero PM, Heintz N, Klann E. Chemogenetic evidence for the requirement of protein synthesis during long term memory consolidation. Brain & Behavior: Order & Disorder in the Nervous System. Cold Spring Harbor Symposium, Cold Spring Harbor, NY - 2018
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Shrestha, P., Ayata P, Gastone A, Herrero PM, Heintz N, Klann E. Chemogenetic interrogation of cell type specific translation in threat memories – Keystone meeting: State of the Brain, Keystone, CO - 2018
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Shrestha, P., Ayata P, Gastone A, Vidal PMH, Heintz N, Klann E. Disrupting memory consolidation by targeting protein synthesis with an inducible pharmacogenetic strategy – Frontiers in Memory Research, La Pietra, Florence, Italy - 2016
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Shrestha, P., Ayata P, Heintz N, Klann E. Inducible pharmacogenetic inhibition of protein synthesis in lateral amygdala. Gordon Research Conference on Amygdala in Health & Disease, Stonehill college, Easton, MA - 2015
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Shrestha, P., Heintz N. Cortical deletion of Wfs1 precipitates stress induced depression. Cell Symposia – The Networked Brain - 2013
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Shrestha, P., Rimberg J, Schmidt EF, Gong S, Heintz N. Comparative translational profiling for genetic cohorts of pyramidal cell types in murine frontal cerebral cortex. EMBL Symposium: Structure & Function of Neural Circuits, Heidelberg - 2010.
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Shrestha, P., Schmidt EF, Skabardonis G, Meyers E, Gong S, Heintz N. Comparative translational profiling for genetic cohorts of pyramidal cells types in murine frontal cerebral cortex. Society for Neuroscience meeting, Chicago - 2009
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Shrestha, P., Gong S, Heintz N. Molecular profile of functional cohort of projection neurons in the mouse frontal cortex. Society for Neuroscience Meeting, San Diego - 2007
Peer Review Service (Journals)
Ad hoc: Neuron, Journal of Neuroscience, Neuropsychopharmacology, Molecular Psychiatry, Frontiers
With previous supervisors: Nature, Neuron, Nature Neuroscience, PNAS
Editorial Board
Reviewing Editor: Frontiers in Molecular Neuroscience (2021 – present)
Select Attended Scientific Meetings
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Society for Neuroscience Annual Meeting, virtual – October, 2021
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Memory: It’s about time (UC Irvine; virtual) – May, 2021
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Innovators in Neuroscience: From Molecules to Mind (Mt Sinai; virtual) – May, 2021
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American College of Neuropsychopharmacology Annual Meeting (virtual) – December, 2020
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Molecular & Cellular Cognition Society Annual Meeting (virtual) – October, 2020
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EMBO Workshop on Molecular neuroscience: from genes to circuits in health & disease – Bangalore, India – February, 2019
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Society for Neuroscience Annual Meeting, San Diego, CA – November, 2018
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Molecular & Cellular Cognition Society Annual Meeting, Washington DC – November, 2018
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Keystone meeting - State of the Brain: Genetic dissection of brain circuits & behavior in health & disease, Keystone, CO – January, 2018
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Molecular & Cellular Cognition Society Annual Meeting, San Diego, CA – November, 2016
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Frontiers in Memory Research, La Pietra, Florence, Italy – June, 2016
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Molecular & Cellular Cognition Society Annual Meeting, Chicago, IL – October, 2015
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Society for Neuroscience Annual Meeting, Chicago, IL – October, 2015
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Gordon Research Conference on Amygdala in Health & Disease, MA – August, 2015
Community Service & Leadership
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Member, Turner Fellowship Advisory Committee, Stony Brook University – 2022
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Panelist, Leon Levy Symposium comprising new PIs, NYU (virtual) - 2021
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Panelist, CoNNexINS panel showcasing former & current NYU postdocs, NYU (virtual)- 2021
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Faculty Search Committee, Stony Brook University Department of Neurobiology & Behavior – 2021-2022
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Director, Behavior Core, Stony Brook University Department of Neurobiology & Behavior – 2021 – present
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Session chair, Molecular & Cellular Cognition Society Annual Meeting - 2018
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Founding Executive Committee Member. International Nepali Biomedical Society (INBS) – 2006 - present
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Program Director, Help Nepal Network (HeNN) USA. www.helpnepal.net - 2005 - present
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Editorial Team & Writer. Natural Selections, A Newsletter of the Rockefeller University, New York. http://selections.rockefeller.edu - 2007 – 2008
Personal journey in science:
Prerana grew up in Kathmandu, Nepal in a family of photographers. After finishing high school in Nepal, Prerana joined Bates College in Maine for her undergraduate degree, majoring in Biological chemistry. She got interested in pursuing academic research as a career after interning in the laboratory of John Blenis at Harvard medical school, where she realized that it was incredibly fascinating to understand the molecular and cellular mechanisms of biological phenomena. She joined The Rockefeller University as a PhD student, and decided to delve deeper into mouse genetics and behavior by joining the laboratory of Molecular Biology, headed by Nathaniel Heintz. She generated multiple transgenic mouse strains useful for the broader scientific community in delineating molecular profile of specific cell populations in the brain. She embarked on a candidate molecule, Wolframin (Wfs1), that was enriched in the superficial layer of pyramidal cells in the prefrontal cortex and co-expressed with neurotrophic factor-3 that piqued her interest. Deleterious mutations in this gene cause Wolfram Syndrome, a neuropsychiatric and metabolic disorder that manifests in a high prevalence of anxiety and depression related symptoms. She carried out neocortex-wide and prefrontal cortex-restricted deletions of this gene in transgenic mice, and discovered a molecular pathway for stress susceptibility in depressive behaviors, spanning dysregulated endocrine response as well as behavioral despair and anhedonia.
Alongside her dissertation research, Prerana was developing a protein synthesis inhibitor that could be genetically encoded and drug-inducible. When she started as a postdoc in the laboratory of Eric Klann at NYU, she applied this chemogenetic tool to decipher the protein synthesis requirement in memory consolidation at the level of individual cell types. She devised parallel chemogenetic strategies to target both general and cap-dependent translation during memory stabilization and showed that both modules of translation are essential for long-term memory formation and recall. She demonstrated cell type specificity of protein synthesis requirement in consolidating cued threat and cued safety related memories, indicating an importance of using cell type-specific tools to understand causal mechanisms in learning and memory.
Prerana is a mother of two wonderful children, and enjoys raising her kids with her husband. She has been an advocate for the less privileged, in her capacity as a Program Director of Help Nepal Network (HeNN US), a global charity that raises funds for community-led health and education related efforts in rural Nepal. She is also a founding board member of International Nepali Biomedical Society (INBS), an organization that provides a platform for connecting researchers of Nepali origin worldwide. As a faculty at Stony Brook University, she serves in the Advisory committee of Turner fellowship. The Dr. W Burghardt Turner Fellowship, coordinated by Center for Inclusive Education, is a graduate fellowship program for eligible underrepresented students whose immediate academic plans include obtaining graduate or professional degrees at Stony Brook University. In her free time, Prerana enjoys running, traveling, and listening to music.
Biography
Prerana received her B.S. in Biological Chemistry from Bates College and her Ph.D. in Life Sciences from the Rockefeller University. Her graduate work focused on studying the influence of gene-environment interaction in healthy and diseased brains. To achieve precise targeting of relevant cell types for top-down control of emotional behaviors, she generated multiple transgenic mouse strains amenable for profiling the translation landscape of specific cell populations in the prefrontal cortex, using translating ribosome affinity purification (TRAP). Her work identified mechanisms that regulate the activity of layer 2/3 pyramidal cells, leading to important insights into the relationship between stress and depression.
After her PhD, Prerana went on to do postdoctoral work at NYU Center for Neural Science, where she developed novel chemogenetic strategies to block nascent protein synthesis with cell type specificity and applied them to probe protein synthesis requirement in memory consolidation. She developed cell-type specific inducible protein synthesis inhibitors (ciPSI) that could inhibit translation at important checkpoints during the initiation step. Her work revealed that rapid neuronal translation is required for consolidation of long-term aversive memories, and further she showed that focal subpopulations of excitatory and inhibitory neurons in the amygdala subnuclei serve as loci for storing long-term threat and safety related memories.
Prerana joined Stony Brook University as an Assistant Professor in the Department of Neurobiology & Behavior in 2021. Prerana’s lab aims to elucidate protein synthesis dynamics in functionally coherent cell populations in healthy brains and diseased brain state of Tuberous Sclerosis Complex (TSC). She is interested in gaining a deeper understanding of the molecular and cellular basis for learned and innate emotional behaviors, and how these may be dysregulated in neuropsychiatric disorders. Towards this goal, her lab applies a multidisciplinary approach of combining mouse transgenesis with state-of-the-art chemogenetics, pharmacology, biochemistry, proteomics, histology, imaging, and behavior.
Mentoring & Supervising:
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Keith Yeung, BS student, Stony Brook University – April 2022 - present
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Michelle Surdyn, MS student, Biophysics & Physiology, Stony Brook University – February 2022 - present
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Stephanie Chu, BS student, Stony Brook University – March 2021 – present
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Karen San Agustin Ruiz, BS student, Dean’s Undergraduate Research Fellowship (DURF), BP-ENDURE program, Max & Cecil Chesin Research Scholar, Goldwater Fellow: November 2018 - present
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Houda Khaled, PhD student, PhD rotation: June 2020 – December 2020
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Mrinalini Singh, BS/MS student, NYU Tandon School of Engineering: February 2020 – December 2020
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Maya Hopkins, PhD student, PhD rotation: January 2020 – June 2020
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Alicia Nnenna Chima, BS student, BP-ENDURE program: September 2019 – May 2020
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Rudi T D’Hooge, Faculty, KU Leuven, Sabbatical: September 2017 – January 2018
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Vinayak Rayannavar, PhD student, PhD Rotation: January 2015- April 2015
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Pedro Manuel Herrero Vidal, PhD student, PhD Rotation: September 2017 – January 2018
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WenXi Zhou, PhD student, PhD rotation: September 2017 – January 2018
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Alex Chong, BS student, Dean’s Undergraduate Research Fellowship (DURF): May 2017 – May 2018
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Laura McCulloch, MD-PhD student, PhD Rotation: August 2015
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Alexandra Gastone, BS student, Dean’s Undergraduate Research Fellowship (DURF) & Independent Study: May 2015 – May 2016
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Ellery Jones, BS student, Harvard University; NYU Summer Undergraduate Research Program (SURP) Fellowship: May 2016 – August 2016
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Nicolai Pena, BS student, University of Arizona; NYU Summer Undergraduate Research Program (SURP)/ Simons Foundation Autism Research Initiative (SFARI) Fellowship: May 2018 – August 2018
Supervised following MS students’ theses:
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Adam Zerihoun, MS student, MS thesis: May 2018 – May 2019
Role of cap-dependent protein synthesis in mPFC neurons in systems consolidation of long-term memory -
Chien-Yu Juan, MS student, MS thesis: August 2018 – May 2019
Behavior characterization & rescue of mutant mice with reduced Tsc2 gene dosage in Oxytocin receptor expressing neurons -
Zhe Shan, MS student, MS thesis: March 2017 – May 2018
Characterization of mTORC1 signaling in the amygdala during discriminative fear memory consolidation -
Pedro Herrero-Vidal, La Caixa Fellow/ MS student, MS thesis: September 2015 – May 2017
Activation of mammalian target of rapamycin (mTOR) signaling in Parvalbumin positive interneurons of the amygdala after fear conditioning
Teaching:
Graduate courses -
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Advanced Neuroscience (BNB565): Instructor for Lecture: Local translation & axon pathfinding – Fall 2021
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Systems Neuroscience (BNB562): Instructor for Lecture: Limbic System – Spring 2022
Undergraduate courses -
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Teaching Assistant & Technical Writing Assistant. Biology Department, Bates College, ME – 2002-2003
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Assisted the Biology faculty in teaching laboratory techniques to the students for core Biology courses. Instructed students about the scientific format of writing project reports & evaluated their reports for critical peer review.
Teaching Experience
Attended Workshops
Miniscope pre-SfN Workshop, Washington DC – November 2017
Junior Scientist Workshop in Neuronal Cell Biology, Janelia Farm – May 2017
Science Interviews & Outreach
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Safalta ani sangharsa (Success and struggle). Hamro Patro Podcast. February 17th, 2022
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Gained in Translation. Top of the NOGN Podcast. June 20th, 2020.
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Stress & Depression. The Naked Scientists Podcast. October 2nd, 2015.
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Recovering Lost Memories. BBC Inside Science. March 17th, 2016.
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Selected as a high-profile neuroscientist on Twitter. Huffington Post, June 11th, 2012
Membership
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Early Career Reviewer, Center for Scientific Review (CSR) at NIH. 2022 - present
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Full Member. Sigma Xi Scientific Research Society. 2021 - present
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Member. Women in Learning. 2019 - present
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Member. Pavlovian Society. 2017 – present
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Member. Society for Behavior Neuroendocrinology. 2021 - present
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Member. Society for Neuroscience. 2005 - present
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Member. New York Academy of Sciences. 2005 - present